For the first time, the modern classification of vegetation is as follows: It is justified that the Goygol National Park tall grass, forests, meadows, rock, steppe; Eldar Pine State Nature Preserve III period elements, xerophytes sparse forests; The Kararyazi State Nature Reserve the tugai forests, the dry steppe; the Korchay state nature reserve consists of desert and semi-desert complexes. Although desert, semi-desert and steppe species occur in specially protected areas, these species have specific features within each reserve. In addition to the zonal vegetation, intrazonal, azonal, and extra zonal species are spread in specially protected natural areas. Systematic structure of flora has been analyzed for its bioecological features, endemism and relict, as well as geographical elements. Systematical, florogenetical, areoloji, bioecological analysis of the flora has been given in the article.